diff --git a/daux.phar b/daux.phar
index 5d9df58..a62cc9f 100755
Binary files a/daux.phar and b/daux.phar differ
diff --git a/libs/Console/Generate.php b/libs/Console/Generate.php
index 3da20e0..c25038c 100644
--- a/libs/Console/Generate.php
+++ b/libs/Console/Generate.php
@@ -18,19 +18,13 @@ class Generate extends SymfonyCommand
             ->addOption('configuration', 'c', InputArgument::OPTIONAL, 'Configuration file')
             ->addOption('format', 'f', InputArgument::OPTIONAL, 'Output format, html or confluence', 'html')
             ->addOption('processor', 'p', InputArgument::OPTIONAL, 'Manipulations on the tree')
+            ->addOption('source', 's', InputArgument::OPTIONAL, 'Where to take the documentation from')
             ->addOption('destination', 'd', InputArgument::OPTIONAL, $description, 'static');
     }
 
     protected function execute(InputInterface $input, OutputInterface $output)
     {
-        // Initialize the system
-        $daux = new Daux(Daux::STATIC_MODE);
-        $daux->initialize($input->getOption('configuration'));
-
-        // Set the format if requested
-        if ($input->getOption('format')) {
-            $daux->getParams()['format'] = $input->getOption('format');
-        }
+        $daux = $this->prepareDaux($input);
 
         $width = $this->getApplication()->getTerminalDimensions()[0];
 
@@ -45,6 +39,26 @@ class Generate extends SymfonyCommand
         $daux->getGenerator()->generateAll($input, $output, $width);
     }
 
+    protected function prepareDaux(InputInterface $input) {
+        $daux = new Daux(Daux::STATIC_MODE);
+
+        // Set the format if requested
+        if ($input->getOption('format')) {
+            $daux->getParams()['format'] = $input->getOption('format');
+        }
+
+        // Set the source directory
+        if ($input->getOption('source')) {
+            $daux->getParams()['docs_directory'] = $input->getOption('source');
+        }
+
+        $daux->setDocumentationPath($daux->getParams()['docs_directory']);
+
+        $daux->initializeConfiguration($input->getOption('configuration'));
+
+        return $daux;
+    }
+
     protected function prepareProcessor(Daux $daux, InputInterface $input, OutputInterface $output, $width)
     {
         if ($input->getOption('processor')) {
diff --git a/libs/Daux.php b/libs/Daux.php
index 146eddc..c55c37c 100644
--- a/libs/Daux.php
+++ b/libs/Daux.php
@@ -63,28 +63,25 @@ class Daux
         if (defined('PHAR_DIR')) {
             $this->local_base = PHAR_DIR;
         }
+
+        // global.json
+        $this->loadBaseConfiguration();
     }
 
     /**
      * @param string $override_file
      * @throws Exception
      */
-    public function initialize($override_file = 'config.json')
+    public function initializeConfiguration($override_file = 'config.json')
     {
-        // global.json
-        $this->loadBaseConfiguration();
+        // Read documentation overrides
+        $this->loadConfiguration($this->docs_path . DIRECTORY_SEPARATOR . 'config.json');
 
-        // Check the documentation path
-        $this->docs_path = $this->options['docs_directory'];
-        if (!is_dir($this->docs_path) &&
-            !is_dir($this->docs_path = $this->local_base . DIRECTORY_SEPARATOR . $this->docs_path)
-        ) {
-            throw new Exception('The Docs directory does not exist. Check the path again : ' . $this->docs_path);
+        // Read command line overrides
+        if (!is_null($override_file)) {
+            $this->loadConfiguration($this->local_base . DIRECTORY_SEPARATOR . $override_file);
         }
 
-        // <docs>/config.json, <overrides.json>
-        $this->loadConfigurationOverrides($override_file);
-
         // Set a valid default timezone
         if (isset($this->options['timezone'])) {
             date_default_timezone_set($this->options['timezone']);
@@ -93,6 +90,16 @@ class Daux
         }
     }
 
+    public function setDocumentationPath($path)
+    {
+        $this->docs_path = $path;
+        if (!is_dir($this->docs_path) &&
+            !is_dir($this->docs_path = $this->local_base . DIRECTORY_SEPARATOR . $this->docs_path)
+        ) {
+            throw new Exception('The Docs directory does not exist. Check the path again : ' . $this->docs_path);
+        }
+    }
+
     /**
      * Load and validate the global configuration
      *
@@ -112,25 +119,6 @@ class Daux
         $this->loadConfiguration($this->local_base . DIRECTORY_SEPARATOR . 'global.json', false);
     }
 
-    /**
-     * Load the configuration files, first, "config.json"
-     * in the documentation and then the file specified
-     * when running the configuration
-     *
-     * @param string $override_file
-     * @throws Exception
-     */
-    protected function loadConfigurationOverrides($override_file)
-    {
-        // Read documentation overrides
-        $this->loadConfiguration($this->docs_path . DIRECTORY_SEPARATOR . 'config.json');
-
-        // Read command line overrides
-        if (!is_null($override_file)) {
-            $this->loadConfiguration($this->local_base . DIRECTORY_SEPARATOR . $override_file);
-        }
-    }
-
     /**
      * @param string $config_file
      * @param bool $optional
diff --git a/libs/Server/Server.php b/libs/Server/Server.php
index f1ee380..42746e1 100644
--- a/libs/Server/Server.php
+++ b/libs/Server/Server.php
@@ -22,7 +22,8 @@ class Server
     public static function serve()
     {
         $daux = new Daux(Daux::LIVE_MODE);
-        $daux->initialize();
+        $daux->setDocumentationPath($daux->getParams()['docs_directory']);
+        $daux->initializeConfiguration();
 
         $class = $daux->getProcessorClass();
         if (!empty($class)) {